Latent Tree Copulas model and related algorithms are described in S. Kirshner, "Latent Tree Copulas," PGM 2012.  The software is implemented in Matlab (with a few routines possibly accelerated using Mex/C++). The software is distributed under BSD license; please read the license terms before downloading and using the software.

Download the software.

The software is provided as is.  Unfortunately, at this time, I have no bandwidth to make modifications or to troubleshoot potential problems.